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hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Version: 2.0.3
Depends: snowfall, R (≥ 3.1.0)
Imports: Rcpp
LinkingTo: RcppArmadillo (≥ 0.4.300.8.0), Rcpp (≥ 0.11.2)
Published: 2024-02-16
DOI: 10.32614/CRAN.package.hsphase
Author: Mohammad Ferdosi, Cedric Gondro
Maintainer: Mohammad Ferdosi <mhferdosi at yahoo.com>
License: GPL-3
NeedsCompilation: yes
Citation: hsphase citation info
CRAN checks: hsphase results

Documentation:

Reference manual: hsphase.pdf
Vignettes: A brief vignette to illustrate the usage of the main functions of hsphase

Downloads:

Package source: hsphase_2.0.3.tar.gz
Windows binaries: r-devel: hsphase_2.0.3.zip, r-release: hsphase_2.0.3.zip, r-oldrel: hsphase_2.0.3.zip
macOS binaries: r-release (arm64): hsphase_2.0.3.tgz, r-oldrel (arm64): hsphase_2.0.3.tgz, r-release (x86_64): hsphase_2.0.3.tgz, r-oldrel (x86_64): hsphase_2.0.3.tgz
Old sources: hsphase archive

Reverse dependencies:

Reverse imports: hsrecombi

Linking:

Please use the canonical form https://CRAN.R-project.org/package=hsphase to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.