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HAPTRACE: Haplotype-Based Tracking of Admixed Population for Breed Composition Estimation

Simulate populations and track haplotypes over generations to evaluate population admixture. The 'HAPTRACE' supports customisable population parameters, including size, number of markers, mutation rates and recombination.

Version: 0.1.1
Imports: data.table, gdata, hsphase (≥ 3.0.1), Rcpp, RcppArmadillo
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown
Published: 2026-07-30
DOI: 10.32614/CRAN.package.HAPTRACE
Author: Shweta Sahoo ORCID iD [aut, cre], Sara de las Heras-Saldana ORCID iD [aut], Julius H. J. van der Werf ORCID iD [aut], Mohammad H. Ferdosi ORCID iD [aut]
Maintainer: Shweta Sahoo <queryhap01 at gmail.com>
License: GPL (≥ 3)
NeedsCompilation: yes
CRAN checks: HAPTRACE results

Documentation:

Reference manual: HAPTRACE.html , HAPTRACE.pdf
Vignettes: Introduction to HAPTRACE (source, R code)

Downloads:

Package source: HAPTRACE_0.1.1.tar.gz
Windows binaries: r-devel: HAPTRACE_0.1.1.zip, r-release: HAPTRACE_0.1.1.zip, r-oldrel: HAPTRACE_0.1.1.zip
macOS binaries: r-release (arm64): HAPTRACE_0.1.1.tgz, r-oldrel (arm64): HAPTRACE_0.1.1.tgz, r-release (x86_64): HAPTRACE_0.1.1.tgz, r-oldrel (x86_64): HAPTRACE_0.1.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HAPTRACE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.