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An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.
| Version: | 0.1.31 |
| Depends: | R (≥ 3.5.0) |
| Imports: | igraph (≥ 0.9.0) |
| Suggests: | rmarkdown, knitr, testthat (≥ 3.1.0), pandoc |
| Published: | 2024-09-25 |
| DOI: | 10.32614/CRAN.package.leidenbase |
| Author: | Brent Ewing [aut, cre], Vincent Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb] |
| Maintainer: | Brent Ewing <bge at uw.edu> |
| BugReports: | https://github.com/cole-trapnell-lab/leidenbase/issues |
| License: | GPL-3 |
| URL: | https://github.com/cole-trapnell-lab/leidenbase |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | leidenbase results |
| Reference manual: | leidenbase.pdf |
| Vignettes: |
leidenbase (source, R code) |
| Package source: | leidenbase_0.1.31.tar.gz |
| Windows binaries: | r-devel: leidenbase_0.1.31.zip, r-release: leidenbase_0.1.31.zip, r-oldrel: leidenbase_0.1.31.zip |
| macOS binaries: | r-release (arm64): leidenbase_0.1.31.tgz, r-oldrel (arm64): leidenbase_0.1.31.tgz, r-release (x86_64): leidenbase_0.1.31.tgz, r-oldrel (x86_64): leidenbase_0.1.31.tgz |
| Old sources: | leidenbase archive |
| Reverse imports: | monocle |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.