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A flexible approach, inspired by cosinor regression, for differential analysis of rhythmic transcriptome data. See Singer and Hughey (2018) <doi:10.1177/0748730418813785>.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.4) |
| Imports: | pbs (≥ 1.1) |
| Suggests: | annotate (≥ 1.58.0), data.table (≥ 1.12.2), foreach (≥ 1.4.4), ggplot2 (≥ 2.2.1), knitr (≥ 1.20), limma (≥ 3.36.1), matrixStats (≥ 0.56.0), org.Mm.eg.db (≥ 3.6.0), qs (≥ 0.25.2), rmarkdown (≥ 1.9), testthat (≥ 3.0.4) |
| Published: | 2022-02-18 |
| DOI: | 10.32614/CRAN.package.limorhyde |
| Author: | Jake Hughey [aut, cre], Jordan Singer [ctb] |
| Maintainer: | Jake Hughey <jakejhughey at gmail.com> |
| BugReports: | https://github.com/hugheylab/limorhyde/issues |
| License: | GPL-2 |
| URL: | https://limorhyde.hugheylab.org, https://github.com/hugheylab/limorhyde |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | limorhyde results |
| Reference manual: | limorhyde.pdf |
| Vignettes: |
Analyzing circadian transcriptome data with LimoRhyde |
| Package source: | limorhyde_1.0.1.tar.gz |
| Windows binaries: | r-devel: limorhyde_1.0.1.zip, r-release: limorhyde_1.0.1.zip, r-oldrel: limorhyde_1.0.1.zip |
| macOS binaries: | r-release (arm64): limorhyde_1.0.1.tgz, r-oldrel (arm64): limorhyde_1.0.1.tgz, r-release (x86_64): limorhyde_1.0.1.tgz, r-oldrel (x86_64): limorhyde_1.0.1.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.