mSigTools: Mutational Signature Analysis Tools

Utility functions for mutational signature analysis as described in Alexandrov, L. B. (2020) <doi:10.1038/s41586-020-1943-3>. This package provides two groups of functions. One is for dealing with mutational signature "exposures" (i.e. the counts of mutations in a sample that are due to each mutational signature). The other group of functions is for matching or comparing sets of mutational signatures. 'mSigTools' stands for mutational Signature analysis Tools.

Version:	1.0.7
Imports:	clue, philentropy, quadprog, sets
Suggests:	cosmicsig, ICAMS, spelling, testthat (≥ 3.0.0)
Published:	2023-01-13
DOI:	10.32614/CRAN.package.mSigTools
Author:	Steven Rozen [aut, cre], Nanhai Jiang [aut]
Maintainer:	Steven Rozen <steverozen at pm.me>
BugReports:	https://github.com/Rozen-Lab/mSigTools/issues
License:	GPL-3
URL:	https://github.com/Rozen-Lab/mSigTools
NeedsCompilation:	no
Language:	en-US
Citation:	mSigTools citation info
Materials:	README NEWS
CRAN checks:	mSigTools results

Documentation:

Reference manual:

mSigTools.pdf

Downloads:

Package source:	mSigTools_1.0.7.tar.gz
Windows binaries:	r-devel: mSigTools_1.0.7.zip, r-release: mSigTools_1.0.7.zip, r-oldrel: mSigTools_1.0.7.zip
macOS binaries:	r-release (arm64): mSigTools_1.0.7.tgz, r-oldrel (arm64): mSigTools_1.0.7.tgz, r-release (x86_64): mSigTools_1.0.7.tgz, r-oldrel (x86_64): mSigTools_1.0.7.tgz
Old sources:	mSigTools archive

Linking:

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