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MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).
Version: | 1.0.3 |
Depends: | R (≥ 3.6), dplyr (≥ 0.7.3), tidygraph (≥ 1.0.0.9999) |
Imports: | Rcpp (≥ 0.12.7), RcppProgress (≥ 0.2.1), RcppArmadillo (≥ 0.9.880.1.0), igraph (≥ 1.0.1), tibble (≥ 1.1), magrittr (≥ 1.5), methods |
LinkingTo: | Rcpp, RcppArmadillo, RcppProgress |
Suggests: | knitr, rmarkdown, testthat, ggraph, dirmult, Rmpfr |
Published: | 2023-11-28 |
DOI: | 10.32614/CRAN.package.malan |
Author: | Mikkel Meyer Andersen [aut, cre] |
Maintainer: | Mikkel Meyer Andersen <mikl at math.aau.dk> |
BugReports: | https://github.com/mikldk/malan/issues |
License: | GPL-2 | file LICENSE |
NeedsCompilation: | yes |
Citation: | malan citation info |
Materials: | README NEWS |
CRAN checks: | malan results |
Reference manual: | malan.pdf |
Vignettes: |
Case study: Partial profiles Introduction |
Package source: | malan_1.0.3.tar.gz |
Windows binaries: | r-devel: malan_1.0.3.zip, r-release: malan_1.0.3.zip, r-oldrel: malan_1.0.3.zip |
macOS binaries: | r-release (arm64): malan_1.0.3.tgz, r-oldrel (arm64): malan_1.0.3.tgz, r-release (x86_64): malan_1.0.3.tgz, r-oldrel (x86_64): malan_1.0.3.tgz |
Old sources: | malan archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.