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Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
| Version: | 0.3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | stats, magrittr, plotly, ggplot2 |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, covr |
| Published: | 2021-04-26 |
| DOI: | 10.32614/CRAN.package.manhattanly |
| Author: | Sahir Bhatnagar [aut, cre] (http://sahirbhatnagar.com/) |
| Maintainer: | Sahir Bhatnagar <sahir.bhatnagar at gmail.com> |
| BugReports: | https://github.com/sahirbhatnagar/manhattanly/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/sahirbhatnagar/manhattanly/, https://sahirbhatnagar.com/manhattanly/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | manhattanly results |
| Reference manual: | manhattanly.pdf |
| Vignettes: |
Interactive Manhattan, Q-Q, and Volcano Plots Using Plotly.js |
| Package source: | manhattanly_0.3.0.tar.gz |
| Windows binaries: | r-devel: manhattanly_0.3.0.zip, r-release: manhattanly_0.3.0.zip, r-oldrel: manhattanly_0.3.0.zip |
| macOS binaries: | r-release (arm64): manhattanly_0.3.0.tgz, r-oldrel (arm64): manhattanly_0.3.0.tgz, r-release (x86_64): manhattanly_0.3.0.tgz, r-oldrel (x86_64): manhattanly_0.3.0.tgz |
| Old sources: | manhattanly archive |
| Reverse suggests: | gap |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.