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A toolkit for analysis of genomic data. The 'misha' package implements an efficient data structure for storing genomic data, and provides a set of functions for data extraction, manipulation and analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay (2011) <doi:10.1038/ng.947>.
| Version: | 4.3.6 |
| Depends: | R (≥ 3.0.0) |
| Imports: | magrittr, curl, utils |
| Suggests: | dplyr, glue, knitr, readr, rmarkdown, spelling, stats, stringr, testthat (≥ 3.0.0), tibble, withr |
| OS_type: | unix |
| Published: | 2025-03-06 |
| DOI: | 10.32614/CRAN.package.misha |
| Author: | Misha Hoichman [aut], Aviezer Lifshitz [aut, cre], Eitan Yaffe [aut], Amos Tanay [aut], Weizmann Institute of Science [cph] |
| Maintainer: | Aviezer Lifshitz <aviezer.lifshitz at weizmann.ac.il> |
| BugReports: | https://github.com/tanaylab/misha/issues |
| License: | MIT + file LICENSE |
| URL: | https://tanaylab.github.io/misha/, https://github.com/tanaylab/misha |
| NeedsCompilation: | yes |
| SystemRequirements: | C++14 |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | misha results |
| Reference manual: | misha.pdf |
| Vignettes: |
Genomes (source, R code) Manual (source, R code) |
| Package source: | misha_4.3.6.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-devel (arm64): misha_4.3.6.tgz, r-release (arm64): misha_4.3.6.tgz, r-oldrel (arm64): misha_4.3.6.tgz, r-devel (x86_64): misha_4.3.6.tgz, r-release (x86_64): misha_4.3.6.tgz, r-oldrel (x86_64): misha_4.3.6.tgz |
| Old sources: | misha archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.