neuroimaGene: Transcriptomic Atlas of Neuroimaging Derived Phenotypes

Contains functions to query and visualize the Neuroimaging features associated with genetically regulated gene expression (GReX). The primary utility, neuroimaGene(), relies on a list of user-defined genes and returns a table of neuroimaging features (NIDPs) associated with each gene. This resource is designed to assist in the interpretation of genome-wide and transcriptome-wide association studies that evaluate brain related traits. Bledsoe (2024) <doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization functions that generate summary plots and 2-dimensional visualizations of regional brain measures. Mowinckel (2020).

Version:	0.1.1
Depends:	R (≥ 3.5.0)
Imports:	data.table, ggplot2, DBI, stringr, ggseg, RSQLite
Suggests:	knitr, rmarkdown
Published:	2024-09-20
DOI:	10.32614/CRAN.package.neuroimaGene
Author:	Xavier Bledsoe [aut, cre], Eric Gamazon [aut]
Maintainer:	Xavier Bledsoe <xavier.bledsoe at vanderbilt.edu>
License:	GPL (≥ 3)
NeedsCompilation:	no
Citation:	neuroimaGene citation info
CRAN checks:	neuroimaGene results

Documentation:

Reference manual:	neuroimaGene.pdf
Vignettes:	neuroimaGene (source, R code)

Downloads:

Package source:	neuroimaGene_0.1.1.tar.gz
Windows binaries:	r-devel: neuroimaGene_0.1.1.zip, r-release: neuroimaGene_0.1.1.zip, r-oldrel: neuroimaGene_0.1.1.zip
macOS binaries:	r-release (arm64): neuroimaGene_0.1.1.tgz, r-oldrel (arm64): neuroimaGene_0.1.1.tgz, r-release (x86_64): neuroimaGene_0.1.1.tgz, r-oldrel (x86_64): neuroimaGene_0.1.1.tgz
Old sources:	neuroimaGene archive

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