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ontologySimilarity: Calculating Ontological Similarities

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Version: 2.7
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 1.0.0), ontologyIndex (≥ 2.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, paintmap
Published: 2024-03-29
DOI: 10.32614/CRAN.package.ontologySimilarity
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: ontologySimilarity results

Documentation:

Reference manual: ontologySimilarity.pdf
Vignettes: Gene Ontology data objects
Examples
Introduction

Downloads:

Package source: ontologySimilarity_2.7.tar.gz
Windows binaries: r-devel: ontologySimilarity_2.7.zip, r-release: ontologySimilarity_2.7.zip, r-oldrel: ontologySimilarity_2.7.zip
macOS binaries: r-release (arm64): ontologySimilarity_2.7.tgz, r-oldrel (arm64): ontologySimilarity_2.7.tgz, r-release (x86_64): ontologySimilarity_2.7.tgz, r-oldrel (x86_64): ontologySimilarity_2.7.tgz
Old sources: ontologySimilarity archive

Reverse dependencies:

Reverse imports: SimReg

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ontologySimilarity to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.