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Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.
| Version: | 2.12 |
| Depends: | R (≥ 3.5.0) |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-02-27 |
| DOI: | 10.32614/CRAN.package.ontologyIndex |
| Author: | Daniel Greene |
| Maintainer: | Daniel Greene <dg333 at cam.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | ontologyIndex citation info |
| Materials: | NEWS |
| CRAN checks: | ontologyIndex results |
| Reference manual: | ontologyIndex.pdf |
| Vignettes: |
Introduction to ontologyX Creating an ontology_index |
| Package source: | ontologyIndex_2.12.tar.gz |
| Windows binaries: | r-devel: ontologyIndex_2.12.zip, r-release: ontologyIndex_2.12.zip, r-oldrel: ontologyIndex_2.12.zip |
| macOS binaries: | r-release (arm64): ontologyIndex_2.12.tgz, r-oldrel (arm64): ontologyIndex_2.12.tgz, r-release (x86_64): ontologyIndex_2.12.tgz, r-oldrel (x86_64): ontologyIndex_2.12.tgz |
| Old sources: | ontologyIndex archive |
| Reverse depends: | CardinalIO, ontoFAST, ontoProc |
| Reverse imports: | BiocSet, famat, fobitools, gsEasy, immunotation, ontologyPlot, ontologySimilarity, ontophylo, rmzqc, scOntoMatch, SimReg, struct |
| Reverse suggests: | bugsigdbr, scDiffCom |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.