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polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: abind, doParallel, foreach, grDevices, graphics, Hmisc, knitr, nlme, RColorBrewer, Rcpp (≥ 0.12.19), reshape2, stats, utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: igraph, mappoly (≥ 0.3.0), polymapR, rmarkdown
Published: 2024-01-09
DOI: 10.32614/CRAN.package.polyqtlR
Author: Peter Bourke [aut, cre], Christine Hackett [ctb], Chris Maliepaard [ctb], Geert van Geest [ctb], Roeland Voorrips [ctb], Johan Willemsen [ctb]
Maintainer: Peter Bourke <pbourkey at gmail.com>
License: GPL-3
NeedsCompilation: yes
Citation: polyqtlR citation info
In views: Agriculture
CRAN checks: polyqtlR results

Documentation:

Reference manual: polyqtlR.pdf
Vignettes: How to use polyqtlR

Downloads:

Package source: polyqtlR_0.1.1.tar.gz
Windows binaries: r-devel: polyqtlR_0.1.1.zip, r-release: polyqtlR_0.1.1.zip, r-oldrel: polyqtlR_0.1.1.zip
macOS binaries: r-release (arm64): polyqtlR_0.1.1.tgz, r-oldrel (arm64): polyqtlR_0.1.1.tgz, r-release (x86_64): polyqtlR_0.1.1.tgz, r-oldrel (x86_64): polyqtlR_0.1.1.tgz
Old sources: polyqtlR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=polyqtlR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.