polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.

Version:	0.1.1
Depends:	R (≥ 3.5.0)
Imports:	abind, doParallel, foreach, grDevices, graphics, Hmisc, knitr, nlme, RColorBrewer, Rcpp (≥ 0.12.19), reshape2, stats, utils
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	igraph, mappoly (≥ 0.3.0), polymapR, rmarkdown
Published:	2024-01-09
DOI:	10.32614/CRAN.package.polyqtlR
Author:	Peter Bourke [aut, cre], Christine Hackett [ctb], Chris Maliepaard [ctb], Geert van Geest [ctb], Roeland Voorrips [ctb], Johan Willemsen [ctb]
Maintainer:	Peter Bourke <pbourkey at gmail.com>
License:	GPL-3
NeedsCompilation:	yes
Citation:	polyqtlR citation info
In views:	Agriculture
CRAN checks:	polyqtlR results

Documentation:

Reference manual:	polyqtlR.pdf
Vignettes:	How to use polyqtlR

Downloads:

Package source:	polyqtlR_0.1.1.tar.gz
Windows binaries:	r-devel: polyqtlR_0.1.1.zip, r-release: polyqtlR_0.1.1.zip, r-oldrel: polyqtlR_0.1.1.zip
macOS binaries:	r-release (arm64): polyqtlR_0.1.1.tgz, r-oldrel (arm64): polyqtlR_0.1.1.tgz, r-release (x86_64): polyqtlR_0.1.1.tgz, r-oldrel (x86_64): polyqtlR_0.1.1.tgz
Old sources:	polyqtlR archive

Linking:

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