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'PubTator' <https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/> is a National Center for Biotechnology Information (NCBI) tool that enhances the annotation of articles on PubMed <https://www.ncbi.nlm.nih.gov/pubmed/>. It makes it possible to rapidly identify potential relationships between genes or proteins using text mining techniques. In contrast, manually searching for and reading the annotated articles would be very time consuming. 'PubTator' offers both an online interface and a RESTful API, however, neither of these approaches are well suited for frequent, high-throughput analyses. The package 'pubtatordb' provides a set of functions that make it easy for the average R user to download 'PubTator' annotations, create, and then query a local version of the database.
Version: | 0.1.4 |
Imports: | DBI, R.utils, RSQLite, assertthat, dplyr, readr |
Suggests: | covr, testthat, knitr, rmarkdown |
Published: | 2019-11-22 |
DOI: | 10.32614/CRAN.package.pubtatordb |
Author: | Zachary Colburn [aut, cre], Madigan Army Medical Center - Department of Clinical Investigation [cph, fnd] |
Maintainer: | Zachary Colburn <zcolburn at gmail.com> |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | pubtatordb results |
Reference manual: | pubtatordb.pdf |
Vignettes: |
pubtatordb |
Package source: | pubtatordb_0.1.4.tar.gz |
Windows binaries: | r-devel: pubtatordb_0.1.4.zip, r-release: pubtatordb_0.1.4.zip, r-oldrel: pubtatordb_0.1.4.zip |
macOS binaries: | r-release (arm64): pubtatordb_0.1.4.tgz, r-oldrel (arm64): pubtatordb_0.1.4.tgz, r-release (x86_64): pubtatordb_0.1.4.tgz, r-oldrel (x86_64): pubtatordb_0.1.4.tgz |
Old sources: | pubtatordb archive |
Please use the canonical form https://CRAN.R-project.org/package=pubtatordb to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.