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rPDBapi: A Comprehensive Interface for Accessing the Protein Data Bank

Provides an R interface to the 'RCSB' Protein Data Bank ('PDB') Search and Data APIs (<https://www.rcsb.org/>). Supports full-text, attribute, sequence, motif, structure, and chemical searches; retrieval of entry-, assembly-, polymer-entity-, and chemical-component-level metadata; and conversion of API responses into analysis-ready tables and typed R objects for reproducible structural bioinformatics workflows.

Version: 3.0.1
Imports: dplyr, purrr, httr, jsonlite, xml2, bio3d, magrittr, methods
Suggests: knitr, r3dmol, rmarkdown, shiny, testthat
Published: 2026-03-08
DOI: 10.32614/CRAN.package.rPDBapi
Author: Selcuk Korkmaz ORCID iD [aut, cre], Bilge Eren Yamasan ORCID iD [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: rPDBapi citation info
Materials: README, NEWS
CRAN checks: rPDBapi results

Documentation:

Reference manual: rPDBapi.html , rPDBapi.pdf
Vignettes: Accessing and Analyzing RCSB PDB Data with rPDBapi (source, R code)

Downloads:

Package source: rPDBapi_3.0.1.tar.gz
Windows binaries: r-devel: rPDBapi_3.0.1.zip, r-release: rPDBapi_2.1.2.zip, r-oldrel: rPDBapi_3.0.1.zip
macOS binaries: r-release (arm64): rPDBapi_3.0.1.tgz, r-oldrel (arm64): rPDBapi_3.0.1.tgz, r-release (x86_64): rPDBapi_3.0.1.tgz, r-oldrel (x86_64): rPDBapi_3.0.1.tgz
Old sources: rPDBapi archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rPDBapi to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.