The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
| Version: | 1.1.4 |
| Imports: | ape, purrr, utils, ggplot2, matrixStats, patchwork, methods |
| Suggests: | knitr, rmarkdown, ggtree, phytools, testthat, formatR |
| Published: | 2022-11-18 |
| DOI: | 10.32614/CRAN.package.rhierbaps |
| Author: | Gerry Tonkin-Hill [cre, aut] |
| Maintainer: | Gerry Tonkin-Hill <g.tonkinhill at gmail.com> |
| BugReports: | https://github.com/gtonkinhill/rhierbaps/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/gtonkinhill/rhierbaps |
| NeedsCompilation: | no |
| Citation: | rhierbaps citation info |
| Materials: | README NEWS |
| CRAN checks: | rhierbaps results |
| Reference manual: | rhierbaps.pdf |
| Vignettes: |
Introduction to rhierbaps |
| Package source: | rhierbaps_1.1.4.tar.gz |
| Windows binaries: | r-devel: rhierbaps_1.1.4.zip, r-release: rhierbaps_1.1.4.zip, r-oldrel: rhierbaps_1.1.4.zip |
| macOS binaries: | r-release (arm64): rhierbaps_1.1.4.tgz, r-oldrel (arm64): rhierbaps_1.1.4.tgz, r-release (x86_64): rhierbaps_1.1.4.tgz, r-oldrel (x86_64): rhierbaps_1.1.4.tgz |
| Old sources: | rhierbaps archive |
Please use the canonical form https://CRAN.R-project.org/package=rhierbaps to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.