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salmonMSE: Management Strategy Evaluation for Salmon Species

Simulation tools to evaluate the long-term effects of salmon management strategies, including a combination of habitat, harvest, and habitat actions. The stochastic age-structured operating model accommodates complex life histories, including freshwater survival across early life stages, juvenile survival and fishery exploitation in the marine life stage, partial maturity by age class, and fitness impacts of hatchery programs on natural spawning populations. 'salmonMSE' also provides an age-structured conditioning model to develop operating models fitted to data.

Version: 0.1.0
Depends: R (≥ 3.5.0)
Imports: abind, MSEtool (≥ 3.7.2), RTMB, dplyr, ggplot2, grDevices, gsl, methods, reshape2, rlang, rmarkdown, stats, utils
Suggests: ggrepel, rstan, testthat (≥ 3.0.0), tmbstan
Published: 2025-09-23
DOI: 10.32614/CRAN.package.salmonMSE
Author: Quang Huynh ORCID iD [aut, cre]
Maintainer: Quang Huynh <quang at bluematterscience.com>
BugReports: https://github.com/Blue-Matter/salmonMSE/issues
License: GPL (≥ 3)
URL: https://docs.salmonmse.com/, https://github.com/Blue-Matter/salmonMSE
NeedsCompilation: no
Materials: README
CRAN checks: salmonMSE results

Documentation:

Reference manual: salmonMSE.html , salmonMSE.pdf

Downloads:

Package source: salmonMSE_0.1.0.tar.gz
Windows binaries: r-devel: salmonMSE_0.1.0.zip, r-release: salmonMSE_0.1.0.zip, r-oldrel: salmonMSE_0.1.0.zip
macOS binaries: r-release (arm64): salmonMSE_0.1.0.tgz, r-oldrel (arm64): salmonMSE_0.1.0.tgz, r-release (x86_64): salmonMSE_0.1.0.tgz, r-oldrel (x86_64): salmonMSE_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=salmonMSE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.