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Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <doi:10.1371/journal.pone.0197954>.
Version: | 1.0.91 |
Depends: | rstan |
Imports: | methods, Rcpp, TMB |
LinkingTo: | StanHeaders, rstan, BH, Rcpp, RcppEigen, TMB, RcppParallel |
Published: | 2023-08-26 |
DOI: | 10.32614/CRAN.package.tmbstan |
Author: | Kasper Kristensen |
Maintainer: | Kasper Kristensen <kaskr at dtu.dk> |
BugReports: | https://github.com/kaskr/tmbstan/issues |
License: | GPL (≥ 3) |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Citation: | tmbstan citation info |
Materials: | NEWS |
In views: | MixedModels |
CRAN checks: | tmbstan results |
Reference manual: | tmbstan.pdf |
Package source: | tmbstan_1.0.91.tar.gz |
Windows binaries: | r-devel: tmbstan_1.0.91.zip, r-release: tmbstan_1.0.91.zip, r-oldrel: tmbstan_1.0.91.zip |
macOS binaries: | r-release (arm64): tmbstan_1.0.91.tgz, r-oldrel (arm64): tmbstan_1.0.91.tgz, r-release (x86_64): tmbstan_1.0.91.tgz, r-oldrel (x86_64): tmbstan_1.0.91.tgz |
Old sources: | tmbstan archive |
Reverse imports: | BayesGP, hmmTMB |
Reverse suggests: | SAMtool |
Reverse enhances: | dsem |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.