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Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Version: | 1.8.0 |
Depends: | R (≥ 3.5.0), MSEtool (≥ 3.0.0) |
Imports: | TMB (≥ 1.9.0), abind, dplyr, gplots, graphics, methods, pbapply, rmarkdown, snowfall, stats, utils, vars |
LinkingTo: | TMB, RcppEigen |
Suggests: | caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis |
Published: | 2024-11-07 |
DOI: | 10.32614/CRAN.package.SAMtool |
Author: | Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut] |
Maintainer: | Quang Huynh <quang at bluematterscience.com> |
BugReports: | https://github.com/Blue-Matter/SAMtool/issues |
License: | GPL-3 |
URL: | https://openmse.com, https://samtool.openmse.com, https://github.com/Blue-Matter/SAMtool |
NeedsCompilation: | yes |
Materials: | README NEWS |
CRAN checks: | SAMtool results |
Reference manual: | SAMtool.pdf |
Package source: | SAMtool_1.8.0.tar.gz |
Windows binaries: | r-devel: SAMtool_1.8.0.zip, r-release: SAMtool_1.8.0.zip, r-oldrel: SAMtool_1.8.0.zip |
macOS binaries: | r-release (arm64): SAMtool_1.8.0.tgz, r-oldrel (arm64): SAMtool_1.8.0.tgz, r-release (x86_64): SAMtool_1.8.0.tgz, r-oldrel (x86_64): SAMtool_1.8.0.tgz |
Old sources: | SAMtool archive |
Reverse depends: | openMSE |
Please use the canonical form https://CRAN.R-project.org/package=SAMtool to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.