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TMB: Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'

With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.

Version: 1.9.15
Depends: R (≥ 3.0.0)
Imports: graphics, methods, stats, utils, Matrix (≥ 1.0-12)
LinkingTo: Matrix, RcppEigen
Suggests: numDeriv, parallel
Published: 2024-09-09
DOI: 10.32614/CRAN.package.TMB
Author: Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr at dtu.dk>
BugReports: https://github.com/kaskr/adcomp/issues
License: GPL-2
Copyright: See the file COPYRIGHTS
TMB copyright details
URL: https://github.com/kaskr/adcomp/wiki
NeedsCompilation: yes
Citation: TMB citation info
Materials: NEWS
In views: Environmetrics, MixedModels
CRAN checks: TMB results

Documentation:

Reference manual: TMB.pdf

Downloads:

Package source: TMB_1.9.15.tar.gz
Windows binaries: r-devel: TMB_1.9.15.zip, r-release: TMB_1.9.15.zip, r-oldrel: TMB_1.9.15.zip
macOS binaries: r-release (arm64): TMB_1.9.15.tgz, r-oldrel (arm64): TMB_1.9.15.tgz, r-release (x86_64): TMB_1.9.15.tgz, r-oldrel (x86_64): TMB_1.9.15.tgz
Old sources: TMB archive

Reverse dependencies:

Reverse depends: ef, gllvm, hmmTMB, phylosem
Reverse imports: ASMbook, bage, BayesGP, clustTMB, disaggregation, DLMtool, dsem, epigrowthfit, fishmethods, FRK, gadget3, GeoAdjust, glmmTMB, LocalCop, marked, MLZ, mmrm, QFASA, RNAdecay, RTMB, SAMtool, sdmTMB, SPAS, SpatialGEV, ssdtools, stelfi, tmbstan, tramME, tsdistributions, tsgarch, unmarked
Reverse linking to: bage, BayesGP, clustTMB, disaggregation, DLMtool, dsem, ef, epigrowthfit, fishmethods, FRK, GeoAdjust, gllvm, glmmTMB, hmmTMB, LocalCop, MLZ, mmrm, phylosem, QFASA, RTMB, SAMtool, sdmTMB, SPAS, SpatialGEV, ssdtools, stelfi, tmbstan, tramME, tsdistributions, tsgarch, unmarked
Reverse suggests: adnuts, broom.mixed, covafillr, insight, MSEtool, parameters, sjPlot

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TMB to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.