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Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
Version: | 0.6.0 |
Depends: | R (≥ 3.5.0) |
Imports: | assertthat, clisymbols, cli, fmesher, fishMod, generics, graphics, lifecycle, lme4, Matrix, methods, mgcv, mvtnorm, nlme, rlang, stats, TMB (≥ 1.8.0) |
LinkingTo: | RcppEigen, TMB |
Suggests: | DHARMa, dplyr, effects (≥ 4.0-1), estimability, emmeans (≥ 1.4), future, future.apply, ggeffects, ggforce, glmmTMB, ggplot2, knitr, rmarkdown, sf, splancs, testthat, tibble, visreg |
Published: | 2024-05-30 |
DOI: | 10.32614/CRAN.package.sdmTMB |
Author: | Sean C. Anderson |
Maintainer: | Sean C. Anderson <sean at seananderson.ca> |
BugReports: | https://github.com/pbs-assess/sdmTMB/issues |
License: | GPL-3 |
Copyright: | inst/COPYRIGHTS sdmTMB copyright details |
URL: | https://pbs-assess.github.io/sdmTMB/, https://github.com/pbs-assess/sdmTMB |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Citation: | sdmTMB citation info |
Materials: | NEWS |
In views: | SpatioTemporal |
CRAN checks: | sdmTMB results |
Reference manual: | sdmTMB.pdf |
Vignettes: |
sdmTMB model description |
Package source: | sdmTMB_0.6.0.tar.gz |
Windows binaries: | r-devel: sdmTMB_0.6.0.zip, r-release: sdmTMB_0.6.0.zip, r-oldrel: sdmTMB_0.6.0.zip |
macOS binaries: | r-devel (arm64): sdmTMB_0.6.0.tgz, r-release (arm64): sdmTMB_0.6.0.tgz, r-oldrel (arm64): sdmTMB_0.6.0.tgz, r-devel (x86_64): sdmTMB_0.6.0.tgz, r-release (x86_64): sdmTMB_0.6.0.tgz, r-oldrel (x86_64): sdmTMB_0.6.0.tgz |
Old sources: | sdmTMB archive |
Reverse suggests: | clustTMB, ggeffects |
Please use the canonical form https://CRAN.R-project.org/package=sdmTMB to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.