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gllvm: Generalized Linear Latent Variable Models

Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation is performed using either Laplace approximation method or variational approximation method implemented via TMB (Kristensen et al., (2016), <doi:10.18637/jss.v070.i05>). For details see Niku et al. (2019a) <doi:10.1371/journal.pone.0216129> and Niku et al. (2019b) <doi:10.1111/2041-210X.13303>.

Version: 1.4.3
Depends: R (≥ 3.5.0), TMB, mvabund
Imports: MASS, Matrix, statmod, fishMod, mgcv, alabama, nloptr, methods
LinkingTo: TMB, RcppEigen
Suggests: knitr, rmarkdown, testthat, gclus, corrplot, lattice
Published: 2023-09-18
DOI: 10.32614/CRAN.package.gllvm
Author: Jenni Niku [aut, cre], Wesley Brooks [aut], Riki Herliansyah [aut], Francis K.C. Hui [aut], Pekka Korhonen [aut], Sara Taskinen [aut], Bert van der Veen [aut], David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku at jyu.fi>
BugReports: https://github.com/JenniNiku/gllvm/issues
License: GPL-2
URL: https://github.com/JenniNiku/gllvm
NeedsCompilation: yes
Citation: gllvm citation info
Materials: README NEWS
In views: Environmetrics
CRAN checks: gllvm results

Documentation:

Reference manual: gllvm.pdf
Vignettes: Analysing multivariate abundance data using gllvm
Analysing high-dimensional microbial community data using gllvm
Introduction to gllvm Part 1: Ordination
Introduction to gllvm Part 2: Species correlations
How to use the quadratic response model
Ordination with predictors

Downloads:

Package source: gllvm_1.4.3.tar.gz
Windows binaries: r-devel: gllvm_1.4.3.zip, r-release: gllvm_1.4.3.zip, r-oldrel: gllvm_1.4.3.zip
macOS binaries: r-release (arm64): gllvm_1.4.3.tgz, r-oldrel (arm64): gllvm_1.4.3.tgz, r-release (x86_64): gllvm_1.4.3.tgz, r-oldrel (x86_64): gllvm_1.4.3.tgz
Old sources: gllvm archive

Reverse dependencies:

Reverse suggests: ecostats

Linking:

Please use the canonical form https://CRAN.R-project.org/package=gllvm to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.