The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.
| Version: | 3.2.2 |
| Depends: | R (≥ 4.0.0) |
| Imports: | Matrix, methods, progress, stats, reshape2 |
| Suggests: | rmarkdown, knitr, testthat, prettydoc |
| Published: | 2023-04-23 |
| DOI: | 10.32614/CRAN.package.scCATCH |
| Author: | Xin Shao |
| Maintainer: | Xin Shao <xin_shao at zju.edu.cn> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/ZJUFanLab/scCATCH |
| NeedsCompilation: | no |
| Citation: | scCATCH citation info |
| Materials: | README |
| CRAN checks: | scCATCH results |
| Reference manual: | scCATCH.pdf |
| Vignettes: |
scCATCH tutorial |
| Package source: | scCATCH_3.2.2.tar.gz |
| Windows binaries: | r-devel: scCATCH_3.2.2.zip, r-release: scCATCH_3.2.2.zip, r-oldrel: scCATCH_3.2.2.zip |
| macOS binaries: | r-release (arm64): scCATCH_3.2.2.tgz, r-oldrel (arm64): scCATCH_3.2.2.tgz, r-release (x86_64): scCATCH_3.2.2.tgz, r-oldrel (x86_64): scCATCH_3.2.2.tgz |
| Old sources: | scCATCH archive |
Please use the canonical form https://CRAN.R-project.org/package=scCATCH to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.