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scPipeline: A Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis

Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within 'Seurat'.

Version: 0.2.0.0
Imports: Seurat, batchelor, dplyr, ReactomeGSA, celldex, SingleR, SummarizedExperiment, biomaRt, magrittr, rlang
Suggests: knitr, rmarkdown
Published: 2025-03-07
DOI: 10.32614/CRAN.package.scPipeline
Author: Viswanadham Sridhara ORCID iD [aut, cre]
Maintainer: Viswanadham Sridhara <Sridhara.Omics at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: scPipeline results

Documentation:

Reference manual: scPipeline.pdf
Vignettes: Introduction to myPackage (source, R code)

Downloads:

Package source: scPipeline_0.2.0.0.tar.gz
Windows binaries: r-devel: not available, r-release: scPipeline_0.2.0.0.zip, r-oldrel: not available
macOS binaries: r-devel (arm64): not available, r-release (arm64): not available, r-oldrel (arm64): not available, r-devel (x86_64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scPipeline to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.