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scSorter: Implementation of 'scSorter' Algorithm

Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.

Version: 0.0.2
Depends: R (≥ 3.6.0)
Imports: stats (≥ 3.6.0)
Suggests: knitr, rmarkdown
Published: 2021-03-17
DOI: 10.32614/CRAN.package.scSorter
Author: Hongyu Guo [aut], Jun Li [aut, cre]
Maintainer: Jun Li <jun.li at nd.edu>
License: GPL-3
NeedsCompilation: no
In views: Omics
CRAN checks: scSorter results

Documentation:

Reference manual: scSorter.pdf
Vignettes: scSorter

Downloads:

Package source: scSorter_0.0.2.tar.gz
Windows binaries: r-devel: scSorter_0.0.2.zip, r-release: scSorter_0.0.2.zip, r-oldrel: scSorter_0.0.2.zip
macOS binaries: r-release (arm64): scSorter_0.0.2.tgz, r-oldrel (arm64): scSorter_0.0.2.tgz, r-release (x86_64): scSorter_0.0.2.tgz, r-oldrel (x86_64): scSorter_0.0.2.tgz
Old sources: scSorter archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scSorter to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.