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Implements the algorithm described in Guo, H., and Li, J., "scSorter: assigning cells to known cell types according to known marker genes". Cluster cells to known cell types based on marker genes specified for each cell type.
| Version: | 0.0.2 |
| Depends: | R (≥ 3.6.0) |
| Imports: | stats (≥ 3.6.0) |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-03-17 |
| DOI: | 10.32614/CRAN.package.scSorter |
| Author: | Hongyu Guo [aut], Jun Li [aut, cre] |
| Maintainer: | Jun Li <jun.li at nd.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | scSorter results |
| Reference manual: | scSorter.pdf |
| Vignettes: |
scSorter |
| Package source: | scSorter_0.0.2.tar.gz |
| Windows binaries: | r-devel: scSorter_0.0.2.zip, r-release: scSorter_0.0.2.zip, r-oldrel: scSorter_0.0.2.zip |
| macOS binaries: | r-release (arm64): scSorter_0.0.2.tgz, r-oldrel (arm64): scSorter_0.0.2.tgz, r-release (x86_64): scSorter_0.0.2.tgz, r-oldrel (x86_64): scSorter_0.0.2.tgz |
| Old sources: | scSorter archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.