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sequoia: Pedigree Inference from SNPs

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<doi:10.1111/1755-0998.12665>) for more information.

Version: 2.11.2
Depends: R (≥ 3.5.0)
Imports: plyr (≥ 1.8.0), stats, utils, graphics, cli
Suggests: openxlsx, knitr, rmarkdown, bookdown, kinship2, R.rsp, hexbin, data.table, vcfR, adegenet
Published: 2024-05-28
DOI: 10.32614/CRAN.package.sequoia
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman at gmail.com>
License: GPL-2
URL: https://jiscah.github.io/
NeedsCompilation: yes
SystemRequirements: Fortran95
Citation: sequoia citation info
Materials: NEWS
CRAN checks: sequoia results

Documentation:

Reference manual: sequoia.pdf
Vignettes: PedCompare Example (Griffin Pedigree)
Quick start example 1: Simulated data
Sequoia - Age 'Prior'
Sequoia User Guide
Sequoia flowchart
Mitochondrial haplotypes

Downloads:

Package source: sequoia_2.11.2.tar.gz
Windows binaries: r-devel: sequoia_2.11.2.zip, r-release: sequoia_2.11.2.zip, r-oldrel: sequoia_2.11.2.zip
macOS binaries: r-release (arm64): sequoia_2.11.2.tgz, r-oldrel (arm64): sequoia_2.11.2.tgz, r-release (x86_64): sequoia_2.11.2.tgz, r-oldrel (x86_64): sequoia_2.11.2.tgz
Old sources: sequoia archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=sequoia to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.