simulist: Simulate Disease Outbreak Line List and Contacts Data

Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.

Version:	0.4.0
Depends:	R (≥ 3.6.0)
Imports:	checkmate, epiparameter (≥ 0.4.0), randomNames, rlang, stats
Suggests:	dplyr, epicontacts (≥ 1.1.3), ggplot2, incidence2 (≥ 2.1.0), knitr, rmarkdown, spelling, testthat (≥ 3.0.0), tidyr
Published:	2025-01-10
DOI:	10.32614/CRAN.package.simulist
Author:	Joshua W. Lambert [aut, cre, cph], Carmen Tamayo [aut], Hugo Gruson [ctb, rev], Pratik R. Gupte [ctb, rev], Adam Kucharski [rev], Chris Hartgerink [rev]
Maintainer:	Joshua W. Lambert <joshua.lambert at lshtm.ac.uk>
BugReports:	https://github.com/epiverse-trace/simulist/issues
License:	MIT + file LICENSE
URL:	https://github.com/epiverse-trace/simulist, https://epiverse-trace.github.io/simulist/
NeedsCompilation:	no
Language:	en-GB
Citation:	simulist citation info
Materials:	README NEWS
CRAN checks:	simulist results

Documentation:

Reference manual:	simulist.pdf
Vignettes:	Age-stratified hospitalisation and death risks (source, R code) Age structured population (source, R code) Design Principles for {simulist} (source, R code) Getting Started with {simulist} (source, R code) Time-varying case fatality risk (source, R code) Visualising simulated data (source, R code) Wrangling simulated outbreak data (source, R code)

Downloads:

Package source:	simulist_0.4.0.tar.gz
Windows binaries:	r-devel: simulist_0.4.0.zip, r-release: simulist_0.4.0.zip, r-oldrel: simulist_0.4.0.zip
macOS binaries:	r-release (arm64): simulist_0.4.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): simulist_0.4.0.tgz, r-oldrel (x86_64): simulist_0.4.0.tgz

Linking:

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