The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
| Version: | 0.7.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | stats, coda, abind, RANN, lme4, foreach, doParallel, spAbundance, methods |
| Suggests: | testthat |
| Published: | 2024-04-19 |
| DOI: | 10.32614/CRAN.package.spOccupancy |
| Author: | Jeffrey Doser [aut, cre], Andrew Finley [aut], Marc Kery [ctb] |
| Maintainer: | Jeffrey Doser <doserjef at msu.edu> |
| BugReports: | https://github.com/doserjef/spOccupancy/issues |
| License: | GPL (≥ 3) |
| URL: | https://www.jeffdoser.com/files/spoccupancy-web, https://github.com/doserjef/spOccupancy |
| NeedsCompilation: | yes |
| Citation: | spOccupancy citation info |
| Materials: | README NEWS |
| In views: | Environmetrics |
| CRAN checks: | spOccupancy results |
| Reference manual: | spOccupancy.pdf |
| Package source: | spOccupancy_0.7.6.tar.gz |
| Windows binaries: | r-devel: spOccupancy_0.7.6.zip, r-release: spOccupancy_0.7.6.zip, r-oldrel: spOccupancy_0.7.6.zip |
| macOS binaries: | r-release (arm64): spOccupancy_0.7.6.tgz, r-oldrel (arm64): spOccupancy_0.7.6.tgz, r-release (x86_64): spOccupancy_0.7.6.tgz, r-oldrel (x86_64): spOccupancy_0.7.6.tgz |
| Old sources: | spOccupancy archive |
Please use the canonical form https://CRAN.R-project.org/package=spOccupancy to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.