The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Fits single-species (univariate) and multi-species (multivariate) non-spatial and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs). Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Fits single-species and multi-species spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson, Negative Binomial), N-mixture models (Royle 2004 <doi:10.1111/j.0006-341X.2004.00142.x>) and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <doi:10.1890/03-3127>). Multi-species spatial models are fit using a spatial factor modeling approach with NNGPs for computational efficiency.
| Version: | 0.2.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | stats, coda, abind, RANN, lme4, foreach, doParallel, methods |
| Suggests: | testthat |
| Published: | 2024-10-05 |
| DOI: | 10.32614/CRAN.package.spAbundance |
| Author: | Jeffrey Doser [aut, cre], Andrew Finley [aut] |
| Maintainer: | Jeffrey Doser <jwdoser at ncsu.edu> |
| BugReports: | https://github.com/biodiverse/spAbundance/issues |
| License: | GPL (≥ 3) |
| URL: | https://www.doserlab.com/files/spabundance-web https://groups.google.com/g/spocc-spabund-users |
| NeedsCompilation: | yes |
| Citation: | spAbundance citation info |
| Materials: | README NEWS |
| CRAN checks: | spAbundance results |
| Reference manual: | spAbundance.pdf |
| Package source: | spAbundance_0.2.1.tar.gz |
| Windows binaries: | r-devel: spAbundance_0.2.1.zip, r-release: spAbundance_0.2.1.zip, r-oldrel: spAbundance_0.2.1.zip |
| macOS binaries: | r-release (arm64): spAbundance_0.2.1.tgz, r-oldrel (arm64): spAbundance_0.2.1.tgz, r-release (x86_64): spAbundance_0.2.1.tgz, r-oldrel (x86_64): spAbundance_0.2.1.tgz |
| Old sources: | spAbundance archive |
| Reverse imports: | spOccupancy |
Please use the canonical form https://CRAN.R-project.org/package=spAbundance to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.