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API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
| Version: | 0.0.92 |
| Depends: | R (≥ 3.4.0) |
| Imports: | Rcpp |
| LinkingTo: | Rcpp |
| Published: | 2024-07-16 |
| DOI: | 10.32614/CRAN.package.strawr |
| Author: | Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph] |
| Maintainer: | Neva Cherniavsky Durand <neva at broadinstitute.org> |
| License: | MIT + file LICENSE |
| URL: | https://github.com/aidenlab/straw/tree/master/R |
| NeedsCompilation: | yes |
| SystemRequirements: | libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb) |
| Materials: | README |
| CRAN checks: | strawr results |
| Reference manual: | strawr.pdf |
| Package source: | strawr_0.0.92.tar.gz |
| Windows binaries: | r-devel: strawr_0.0.92.zip, r-release: strawr_0.0.92.zip, r-oldrel: strawr_0.0.92.zip |
| macOS binaries: | r-release (arm64): strawr_0.0.92.tgz, r-oldrel (arm64): strawr_0.0.92.tgz, r-release (x86_64): strawr_0.0.92.tgz, r-oldrel (x86_64): strawr_0.0.92.tgz |
| Old sources: | strawr archive |
| Reverse imports: | HicAggR, HiCExperiment, mariner, plotgardener, trackViewer |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.