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strollur: Store and Transfer Amplicon Sequence Data

Stores the data associated with your amplicon sequence analysis. This includes nucleotide sequences, abundance, sample and treatment assignments, taxonomic classifications, asv, otu and phylotype clusters, metadata, trees and various reports. It is designed to facilitate data analysis across multiple R packages with utility functions to read / write from 'mothur', 'qiime2', 'dada2', and 'phyloseq'.

Version: 0.1.2
Depends: R (≥ 4.5.0)
Imports: Rcpp, cli, methods, microseq, R.utils, R6, waldo, readr, ape, dplyr, tidyr, yaml, rbiom (≥ 3.1.0), stats, utils
LinkingTo: Rcpp, cli, Rcereal
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), xml2, phyloseq, ggplot2, phylotypr, rhdf5, h5lite, pak
Published: 2026-06-24
DOI: 10.32614/CRAN.package.strollur (may not be active yet)
Author: Sarah Westcott ORCID iD [aut], Gregory Johnson ORCID iD [aut], Pat Schloss ORCID iD [cph, cre]
Maintainer: Pat Schloss <pschloss at umich.edu>
BugReports: https://github.com/mothur/strollur/issues
License: GPL (≥ 3)
URL: https://github.com/mothur/strollur, https://mothur.org/strollur/
NeedsCompilation: yes
Citation: strollur citation info
Materials: README, NEWS
CRAN checks: strollur results

Documentation:

Reference manual: strollur.html , strollur.pdf
Vignettes: Accessing Data (source, R code)
Data Transfers (source, R code)
Example Analysis Across Software Tools (source, R code)
Functions for package developers (source, R code)
General Importing (source, R code)
Importing from mothur (source, R code)
Importing from phyloseq (source, R code)
Importing from qiime2 (source, R code)
Getting Started (source, R code)

Downloads:

Package source: strollur_0.1.2.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): strollur_0.1.2.tgz, r-oldrel (arm64): strollur_0.1.2.tgz, r-release (x86_64): strollur_0.1.2.tgz, r-oldrel (x86_64): strollur_0.1.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=strollur to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.