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Creates a local Lightning Memory-Mapped Database ('LMDB') of many commonly used taxonomic authorities and provides functions that can quickly query this data. Supported taxonomic authorities include the Integrated Taxonomic Information System ('ITIS'), National Center for Biotechnology Information ('NCBI'), Global Biodiversity Information Facility ('GBIF'), Catalogue of Life ('COL'), and Open Tree Taxonomy ('OTT'). Name and identifier resolution using 'LMDB' can be hundreds of times faster than either relational databases or internet-based queries. Precise data provenance information for data derived from naming providers is also included.
Version: | 0.1.5 |
Depends: | R (≥ 4.0) |
Imports: | thor, contentid |
Suggests: | jsonlite, spelling, testthat, covr, knitr, rmarkdown, progress, utf8, crayon |
Published: | 2021-09-14 |
DOI: | 10.32614/CRAN.package.taxalight |
Author: | Carl Boettiger [aut, cre], Kari Norman [aut] |
Maintainer: | Carl Boettiger <cboettig at gmail.com> |
BugReports: | https://github.com/cboettig/taxalight |
License: | MIT + file LICENSE |
URL: | https://github.com/cboettig/taxalight |
NeedsCompilation: | no |
Language: | en-US |
Materials: | README NEWS |
CRAN checks: | taxalight results |
Reference manual: | taxalight.pdf |
Package source: | taxalight_0.1.5.tar.gz |
Windows binaries: | r-devel: taxalight_0.1.5.zip, r-release: taxalight_0.1.5.zip, r-oldrel: taxalight_0.1.5.zip |
macOS binaries: | r-release (arm64): taxalight_0.1.5.tgz, r-oldrel (arm64): taxalight_0.1.5.tgz, r-release (x86_64): taxalight_0.1.5.tgz, r-oldrel (x86_64): taxalight_0.1.5.tgz |
Old sources: | taxalight archive |
Reverse suggests: | RNeXML |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.