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treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

Version: 0.5.0
Depends: ape (≥ 5.0), limSolve (≥ 1.5.5.0)
Suggests: lubridate, ggplot2, foreach, iterators, mgcv, knitr, rmarkdown
Published: 2020-01-26
DOI: 10.32614/CRAN.package.treedater
Author: Erik Volz [aut, cre]
Maintainer: Erik Volz <erik.volz at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: README
In views: Phylogenetics
CRAN checks: treedater results

Documentation:

Reference manual: treedater.pdf
Vignettes: H3N2

Downloads:

Package source: treedater_0.5.0.tar.gz
Windows binaries: r-devel: treedater_0.5.0.zip, r-release: treedater_0.5.0.zip, r-oldrel: treedater_0.5.0.zip
macOS binaries: r-release (arm64): treedater_0.5.0.tgz, r-oldrel (arm64): treedater_0.5.0.tgz, r-release (x86_64): treedater_0.5.0.tgz, r-oldrel (x86_64): treedater_0.5.0.tgz
Old sources: treedater archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.