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Tools for the exploration of distributions of phylogenetic trees. This package includes a 'shiny' interface which can be started from R using treespaceServer(). For further details see Jombart et al. (2017) <doi:10.1111/1755-0998.12676>.
Version: | 1.1.4.3 |
Depends: | R (≥ 3.4.0), ape, ade4 |
Imports: | adegenet, adegraphics, combinat, compiler, distory, fields, htmlwidgets, MASS, methods, parallel, phangorn, phytools, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS, utils |
LinkingTo: | Rcpp |
Suggests: | ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rmarkdown, sf, testthat |
Published: | 2023-09-07 |
DOI: | 10.32614/CRAN.package.treespace |
Author: | Thibaut Jombart [aut], Michelle Kendall [aut, cre], Jacob Almagro-Garcia [aut], Caroline Colijn [aut] |
Maintainer: | Michelle Kendall <michelle.kendall at warwick.ac.uk> |
BugReports: | https://github.com/thibautjombart/treespace/issues |
License: | MIT + file LICENSE |
URL: | https://cran.r-project.org/package=treespace, https://github.com/thibautjombart/treespace |
NeedsCompilation: | yes |
Citation: | treespace citation info |
Materials: | README NEWS |
In views: | Phylogenetics |
CRAN checks: | treespace results |
Package source: | treespace_1.1.4.3.tar.gz |
Windows binaries: | r-devel: treespace_1.1.4.3.zip, r-release: treespace_1.1.4.3.zip, r-oldrel: treespace_1.1.4.3.zip |
macOS binaries: | r-release (arm64): treespace_1.1.4.3.tgz, r-oldrel (arm64): treespace_1.1.4.3.tgz, r-release (x86_64): treespace_1.1.4.3.tgz, r-oldrel (x86_64): treespace_1.1.4.3.tgz |
Old sources: | treespace archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.