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valr: Genome Interval Arithmetic

Read and manipulate genome intervals and signals. Provides functionality similar to command-line tool suites within R, enabling interactive analysis and visualization of genome-scale data. Riemondy et al. (2017) <doi:10.12688/f1000research.11997.1>.

Version: 0.8.2
Depends: R (≥ 3.1.2)
Imports: broom, cli, dplyr (≥ 0.8.0), ggplot2, lifecycle, Rcpp (≥ 1.0.0), readr, rlang, rtracklayer, stringr, tibble (≥ 1.4.2)
LinkingTo: Rcpp (≥ 1.0.0)
Suggests: bench, covr, cowplot, curl, DBI, dbplyr, devtools, DT, GenomicRanges, IRanges, knitr, purrr, RMariaDB, rmarkdown, S4Vectors, testthat (≥ 3.0.0), vdiffr (≥ 1.0.0), tidyr
Published: 2024-08-30
DOI: 10.32614/CRAN.package.valr
Author: Jay Hesselberth ORCID iD [aut], Kent Riemondy ORCID iD [aut, cre], RNA Bioscience Initiative [fnd, cph]
Maintainer: Kent Riemondy <kent.riemondy at gmail.com>
BugReports: https://github.com/rnabioco/valr/issues
License: MIT + file LICENSE
URL: https://github.com/rnabioco/valr/, https://rnabioco.github.io/valr/
NeedsCompilation: yes
Citation: valr citation info
Materials: README NEWS
In views: Omics
CRAN checks: valr results

Documentation:

Reference manual: valr.pdf
Vignettes: valr-overview (source, R code)

Downloads:

Package source: valr_0.8.2.tar.gz
Windows binaries: r-devel: valr_0.8.2.zip, r-release: valr_0.8.2.zip, r-oldrel: valr_0.8.2.zip
macOS binaries: r-release (arm64): valr_0.8.2.tgz, r-oldrel (arm64): valr_0.8.2.tgz, r-release (x86_64): valr_0.8.2.tgz, r-oldrel (x86_64): valr_0.8.2.tgz
Old sources: valr archive

Reverse dependencies:

Reverse suggests: gap

Linking:

Please use the canonical form https://CRAN.R-project.org/package=valr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.