CRAN Package Check Results for Maintainer ‘Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>’

Last updated on 2025-03-23 15:51:07 CET.

Package	WARN	NOTE	OK
dvir			15
forrel			15
IBDsim	1	3	11
ibdsim2			15
KLINK		6	9
paramlink	1	3	11
paramlink2			15
pedbuildr			15
pedFamilias			15
pedmut			15
pedprobr		1	14
pedsuite			15
pedtools			15
ribd			15
segregatr			15
verbalisr			15

Package dvir

Current CRAN status: OK: 15

Package forrel

Current CRAN status: OK: 15

Package IBDsim

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 0.9-8
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: IBDsim.Rd: linkdat oneLocusIBD.Rd: linkdat oneLocusJacquard.Rd: jacquard, linkdat twoLocusIBD.Rd: linkdat twoLocusJacquard.Rd: linkdat, jacquard Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 0.9-8
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: IBDsim.Rd:17: missing link ‘linkdat’ Rd warning: oneLocusIBD.Rd:14: missing link ‘linkdat’ Rd warning: oneLocusJacquard.Rd:7: missing link ‘jacquard’ Rd warning: oneLocusJacquard.Rd:14: missing link ‘linkdat’ Rd warning: oneLocusJacquard.Rd:40: missing link ‘jacquard’ Rd warning: twoLocusIBD.Rd:15: missing link ‘linkdat’ Rd warning: twoLocusJacquard.Rd:14: missing link ‘linkdat’ Rd warning: twoLocusJacquard.Rd:46: missing link ‘jacquard’ See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IBDsim.Rcheck/00install.out’ for details. * used C compiler: ‘gcc-14 (Debian 14.2.0-17) 14.2.0’ Flavor: r-patched-linux-x86_64

Package ibdsim2

Current CRAN status: OK: 15

Package KLINK

Current CRAN status: NOTE: 6, OK: 9

Version: 1.0.2
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.2.0 because package code uses the pipe placeholder syntax added in R 4.2.0. File(s) using such syntax: ‘linkedLR.Rd’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package paramlink

Current CRAN status: WARN: 1, NOTE: 3, OK: 11

Version: 1.1-5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: plot.linkdat.Rd: plot.pedigree Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.1-5
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: plot.linkdat.Rd:118: missing link ‘plot.pedigree’ Flavor: r-patched-linux-x86_64

Package paramlink2

Current CRAN status: OK: 15

Package pedbuildr

Current CRAN status: OK: 15

Package pedFamilias

Current CRAN status: OK: 15

Package pedmut

Current CRAN status: OK: 15

Package pedprobr

Current CRAN status: NOTE: 1, OK: 14

Version: 0.9.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: genoCombinations.Rd: ped, marker likelihood.Rd: marker, breakLoops merlin.Rd: ped oneMarkerDistribution.Rd: breakLoops twoMarkerDistribution.Rd: breakLoops Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Package pedsuite

Current CRAN status: OK: 15

Package pedtools

Current CRAN status: OK: 15

Package ribd

Current CRAN status: OK: 15

Package segregatr

Current CRAN status: OK: 15

Package verbalisr

Current CRAN status: OK: 15