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Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.
Version: | 1.2.0 |
Depends: | R (≥ 3.50) |
Imports: | dplyr, ggplot2, ggpubr, magrittr, patchwork, png, purrr, rlang, Seurat, stringr, utils |
Suggests: | covr, knitr, rmarkdown, Signac, testthat (≥ 3.0.0) |
Published: | 2023-11-11 |
DOI: | 10.32614/CRAN.package.AnanseSeurat |
Author: | Jos Smits [aut, cre, cph], Huiqing Jo Zhou [aut, fnd, cph] |
Maintainer: | Jos Smits <Jsmits at science.ru.nl> |
BugReports: | https://github.com/JGASmits/AnanseSeurat/issues |
License: | Apache License (≥ 2) |
URL: | https://github.com/JGASmits/AnanseSeurat/ |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | AnanseSeurat results |
Reference manual: | AnanseSeurat.pdf |
Vignettes: |
introduction |
Package source: | AnanseSeurat_1.2.0.tar.gz |
Windows binaries: | r-devel: AnanseSeurat_1.2.0.zip, r-release: AnanseSeurat_1.2.0.zip, r-oldrel: AnanseSeurat_1.2.0.zip |
macOS binaries: | r-release (arm64): AnanseSeurat_1.2.0.tgz, r-oldrel (arm64): AnanseSeurat_1.2.0.tgz, r-release (x86_64): AnanseSeurat_1.2.0.tgz, r-oldrel (x86_64): AnanseSeurat_1.2.0.tgz |
Old sources: | AnanseSeurat archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.