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Cyclops: Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

This model fitting tool incorporates cyclic coordinate descent and majorization-minimization approaches to fit a variety of regression models found in large-scale observational healthcare data. Implementations focus on computational optimization and fine-scale parallelization to yield efficient inference in massive datasets. Please see: Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.

Version: 3.4.1
Depends: R (≥ 3.5.0)
Imports: rlang, Matrix, Rcpp (≥ 0.12.12), Andromeda (≥ 0.3.1), dplyr, methods, survival, bit64
LinkingTo: Rcpp, RcppEigen (≥ 0.3.2), RcppParallel
Suggests: testthat, readr, MASS, gnm, ggplot2, microbenchmark, cmprsk
Published: 2024-06-06
DOI: 10.32614/CRAN.package.Cyclops
Author: Marc A. Suchard [aut, cre], Martijn J. Schuemie [aut], Trevor R. Shaddox [aut], Yuxi Tian [aut], Jianxiao Yang [aut], Eric Kawaguchi [aut], Sushil Mittal [ctb], Observational Health Data Sciences and Informatics [cph], Marcus Geelnard [cph, ctb] (provided the TinyThread library), Rutgers University [cph, ctb] (provided the HParSearch routine), R Development Core Team [cph, ctb] (provided the ZeroIn routine)
Maintainer: Marc A. Suchard <msuchard at ucla.edu>
BugReports: https://github.com/ohdsi/cyclops/issues
License: Apache License 2.0
URL: https://github.com/ohdsi/cyclops
NeedsCompilation: yes
Citation: Cyclops citation info
Materials: README NEWS
In views: Survival
CRAN checks: Cyclops results

Documentation:

Reference manual: Cyclops.pdf

Downloads:

Package source: Cyclops_3.4.1.tar.gz
Windows binaries: r-devel: Cyclops_3.4.1.zip, r-release: Cyclops_3.4.1.zip, r-oldrel: Cyclops_3.4.1.zip
macOS binaries: r-release (arm64): Cyclops_3.4.1.tgz, r-oldrel (arm64): Cyclops_3.4.1.tgz, r-release (x86_64): Cyclops_3.4.1.tgz, r-oldrel (x86_64): Cyclops_3.4.1.tgz
Old sources: Cyclops archive

Reverse dependencies:

Reverse depends: BrokenAdaptiveRidge, IterativeHardThresholding
Reverse imports: EvidenceSynthesis
Reverse suggests: EmpiricalCalibration

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Cyclops to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.