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GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People
A fast, scalable, and versatile framework for
simulating large systems with Gillespie's Stochastic Simulation
Algorithm ('SSA'). This package is the spiritual successor to the
'GillespieSSA' package originally written by Mario Pineda-Krch.
Benefits of this package include major speed improvements (>100x),
easier to understand documentation, and many unit tests that try to
ensure the package works as intended. Cannoodt and Saelens et al. (2021)
<doi:10.1038/s41467-021-24152-2>.
| Version: |
0.3.0 |
| Depends: |
R (≥ 3.3) |
| Imports: |
assertthat, dplyr, dynutils, Matrix, methods, purrr, Rcpp (≥
0.12.3), RcppXPtrUtils, readr, rlang, stringr, tidyr |
| LinkingTo: |
Rcpp |
| Suggests: |
covr, ggplot2, GillespieSSA, knitr, rmarkdown, testthat (≥
2.1.0) |
| Published: |
2023-01-23 |
| DOI: |
10.32614/CRAN.package.GillespieSSA2 |
| Author: |
Robrecht Cannoodt 
[aut, cre],
Wouter Saelens
[aut] |
| Maintainer: |
Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: |
https://github.com/rcannood/GillespieSSA2/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://rcannood.github.io/GillespieSSA2/,
https://github.com/rcannood/GillespieSSA2 |
| NeedsCompilation: |
yes |
| Citation: |
GillespieSSA2 citation info |
| Materials: |
README NEWS |
| CRAN checks: |
GillespieSSA2 results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=GillespieSSA2
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.