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dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses

A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.

Version: 1.0.5
Depends: R (≥ 3.5.0)
Imports: assertthat, dplyr, dynutils (≥ 1.0.10), ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis
Suggests: anndata, covr, dynwrap (≥ 1.2.0), R.rsp, rmarkdown, Seurat, SingleCellExperiment (≥ 1.5.3), SummarizedExperiment, testthat
Published: 2022-10-12
DOI: 10.32614/CRAN.package.dyngen
Author: Robrecht Cannoodt ORCID iD [aut, cre, cph], Wouter Saelens ORCID iD [aut]
Maintainer: Robrecht Cannoodt <rcannood at gmail.com>
BugReports: https://github.com/dynverse/dyngen/issues
License: MIT + file LICENSE
URL: https://dyngen.dynverse.org, https://github.com/dynverse/dyngen
NeedsCompilation: no
Citation: dyngen citation info
Materials: README NEWS
CRAN checks: dyngen results

Documentation:

Reference manual: dyngen.pdf
Vignettes: Getting started
Installation instructions

Downloads:

Package source: dyngen_1.0.5.tar.gz
Windows binaries: r-devel: dyngen_1.0.5.zip, r-release: dyngen_1.0.5.zip, r-oldrel: dyngen_1.0.5.zip
macOS binaries: r-release (arm64): dyngen_1.0.5.tgz, r-oldrel (arm64): dyngen_1.0.5.tgz, r-release (x86_64): dyngen_1.0.5.tgz, r-oldrel (x86_64): dyngen_1.0.5.tgz
Old sources: dyngen archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=dyngen to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.