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A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.
Version: | 1.0.5 |
Depends: | R (≥ 3.5.0) |
Imports: | assertthat, dplyr, dynutils (≥ 1.0.10), ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis |
Suggests: | anndata, covr, dynwrap (≥ 1.2.0), R.rsp, rmarkdown, Seurat, SingleCellExperiment (≥ 1.5.3), SummarizedExperiment, testthat |
Published: | 2022-10-12 |
DOI: | 10.32614/CRAN.package.dyngen |
Author: | Robrecht Cannoodt [aut, cre, cph], Wouter Saelens [aut] |
Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
BugReports: | https://github.com/dynverse/dyngen/issues |
License: | MIT + file LICENSE |
URL: | https://dyngen.dynverse.org, https://github.com/dynverse/dyngen |
NeedsCompilation: | no |
Citation: | dyngen citation info |
Materials: | README NEWS |
CRAN checks: | dyngen results |
Reference manual: | dyngen.pdf |
Vignettes: |
Getting started Installation instructions |
Package source: | dyngen_1.0.5.tar.gz |
Windows binaries: | r-devel: dyngen_1.0.5.zip, r-release: dyngen_1.0.5.zip, r-oldrel: dyngen_1.0.5.zip |
macOS binaries: | r-release (arm64): dyngen_1.0.5.tgz, r-oldrel (arm64): dyngen_1.0.5.tgz, r-release (x86_64): dyngen_1.0.5.tgz, r-oldrel (x86_64): dyngen_1.0.5.tgz |
Old sources: | dyngen archive |
Please use the canonical form https://CRAN.R-project.org/package=dyngen to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.