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Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.
| Version: | 2.0.2 |
| Imports: | Rcpp (≥ 1.0.4), prodlim |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | BinaryDosage, testthat (≥ 2.1.0), covr, knitr, rmarkdown |
| Published: | 2020-10-02 |
| DOI: | 10.32614/CRAN.package.GxEScanR |
| Author: | John Morrison [aut, cre], NCI [fnd] (CA196559), NCI [fnd] (CA201407), NIEHS [fnd] (ES007048), NHLBI [fnd] (HL115606) |
| Maintainer: | John Morrison <jmorr at usc.edu> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Language: | en-US |
| Materials: | NEWS |
| CRAN checks: | GxEScanR results |
| Reference manual: | GxEScanR.pdf |
| Vignettes: |
Using GxEScanR |
| Package source: | GxEScanR_2.0.2.tar.gz |
| Windows binaries: | r-devel: GxEScanR_2.0.2.zip, r-release: GxEScanR_2.0.2.zip, r-oldrel: GxEScanR_2.0.2.zip |
| macOS binaries: | r-release (arm64): GxEScanR_2.0.2.tgz, r-oldrel (arm64): GxEScanR_2.0.2.tgz, r-release (x86_64): GxEScanR_2.0.2.tgz, r-oldrel (x86_64): GxEScanR_2.0.2.tgz |
| Old sources: | GxEScanR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.