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GxEScanR: Run GWAS/GWEIS Scans Using Binary Dosage Files

Tools to run genome-wide association study (GWAS) and genome-wide by environment interaction study (GWEIS) scans using the genetic data stored in a binary dosage file. The user provides a data frame with the subject's covariate data and the information about the binary dosage file returned by the BinaryDosage::getbdinfo() routine.

Version: 2.0.2
Imports: Rcpp (≥ 1.0.4), prodlim
LinkingTo: Rcpp, RcppArmadillo
Suggests: BinaryDosage, testthat (≥ 2.1.0), covr, knitr, rmarkdown
Published: 2020-10-02
DOI: 10.32614/CRAN.package.GxEScanR
Author: John Morrison [aut, cre], NCI [fnd] (CA196559), NCI [fnd] (CA201407), NIEHS [fnd] (ES007048), NHLBI [fnd] (HL115606)
Maintainer: John Morrison <jmorr at usc.edu>
License: GPL-3
NeedsCompilation: yes
Language: en-US
Materials: NEWS
CRAN checks: GxEScanR results

Documentation:

Reference manual: GxEScanR.pdf
Vignettes: Using GxEScanR

Downloads:

Package source: GxEScanR_2.0.2.tar.gz
Windows binaries: r-devel: GxEScanR_2.0.2.zip, r-release: GxEScanR_2.0.2.zip, r-oldrel: GxEScanR_2.0.2.zip
macOS binaries: r-release (arm64): GxEScanR_2.0.2.tgz, r-oldrel (arm64): GxEScanR_2.0.2.tgz, r-release (x86_64): GxEScanR_2.0.2.tgz, r-oldrel (x86_64): GxEScanR_2.0.2.tgz
Old sources: GxEScanR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=GxEScanR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.