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BinaryDosage: Creates, Merges, and Reads Binary Dosage Files

Tools to create binary dosage from either VCF or GEN files, merge binary dosage files, and read binary dosage files.

Version: 1.0.0
Imports: Rcpp, digest, prodlim
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (≥ 2.1.0), covr
Published: 2020-01-13
DOI: 10.32614/CRAN.package.BinaryDosage
Author: John Morrison [aut, cre], NIEHS [fnd] (P01 CA196559), NIEHS [fnd] (R01 CA201407), NIEHS [fnd] (P30 ES007048), NIEHS [fnd] (P01 HL115606)
Maintainer: John Morrison <jmorr at usc.edu>
License: GPL-3
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: BinaryDosage results

Documentation:

Reference manual: BinaryDosage.pdf
Vignettes: Binary Dosage Formats
Genetic File Information
Merging Files
Estimating Imputed R-squares
Using Binary Dosage files
Using GEN Files
Using VCF Files

Downloads:

Package source: BinaryDosage_1.0.0.tar.gz
Windows binaries: r-devel: BinaryDosage_1.0.0.zip, r-release: BinaryDosage_1.0.0.zip, r-oldrel: BinaryDosage_1.0.0.zip
macOS binaries: r-release (arm64): BinaryDosage_1.0.0.tgz, r-oldrel (arm64): BinaryDosage_1.0.0.tgz, r-release (x86_64): BinaryDosage_1.0.0.tgz, r-oldrel (x86_64): BinaryDosage_1.0.0.tgz

Reverse dependencies:

Reverse suggests: GxEScanR

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BinaryDosage to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.