vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
| Version: | 0.6.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | Rcpp, methods, stats, utils |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-09-29 |
| DOI: | 10.32614/CRAN.package.vcfppR |
| Author: | Zilong Li  [aut,
cre],
Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and
Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas and Davies,
Robert M [cph] (Authors of included htslib library) |
| Maintainer: | Zilong Li <zilong.dk at gmail.com> |
| BugReports: | https://github.com/Zilong-Li/vcfppR/issues |
| License: | MIT + file LICENSE |
| Copyright: | See the file COPYRIGHTS for various htslib copyright details vcfppR copyright details |
| URL: | https://github.com/Zilong-Li/vcfppR |
| NeedsCompilation: | yes |
| SystemRequirements: | libcurl: libcurl-devel (rpm) or libcurl4-openssl-dev (deb), GNU make. |
| Citation: | vcfppR citation info |
| Materials: | README NEWS |
| CRAN checks: | vcfppR results |
Documentation:
| Reference manual: | vcfppR.pdf |
| Vignettes: |
Assess the concordance between VCFs (source, R code) |
Downloads:
| Package source: | vcfppR_0.6.0.tar.gz |
| Windows binaries: | r-devel: vcfppR_0.6.0.zip, r-release: vcfppR_0.6.0.zip, r-oldrel: vcfppR_0.6.0.zip |
| macOS binaries: | r-release (arm64): vcfppR_0.6.0.tgz, r-oldrel (arm64): vcfppR_0.6.0.tgz, r-release (x86_64): vcfppR_0.6.0.tgz, r-oldrel (x86_64): vcfppR_0.6.0.tgz |
| Old sources: | vcfppR archive |
Linking:
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