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JBrowseR: An R Interface to the JBrowse 2 Genome Browser

Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.

Version: 0.10.2
Imports: htmltools, htmlwidgets, reactR, stringr, magrittr, readr, jsonlite, httpuv, mime, cli, ids, dplyr
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2023-12-20
DOI: 10.32614/CRAN.package.JBrowseR
Author: Elliot Hershberg ORCID iD [aut], Colin Diesh ORCID iD [aut, cre], the JBrowse 2 Team [aut]
Maintainer: Colin Diesh <colin.diesh at gmail.com>
License: Apache License (≥ 2)
URL: https://gmod.github.io/JBrowseR/ https://github.com/GMOD/JBrowseR
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: JBrowseR results

Documentation:

Reference manual: JBrowseR.pdf
Vignettes: Introduction to JBrowseR
Creating URLs
Custom browser tutorial
Advanced JSON tutorial

Downloads:

Package source: JBrowseR_0.10.2.tar.gz
Windows binaries: r-devel: JBrowseR_0.10.2.zip, r-release: JBrowseR_0.10.2.zip, r-oldrel: JBrowseR_0.10.2.zip
macOS binaries: r-release (arm64): JBrowseR_0.10.2.tgz, r-oldrel (arm64): JBrowseR_0.10.2.tgz, r-release (x86_64): JBrowseR_0.10.2.tgz, r-oldrel (x86_64): JBrowseR_0.10.2.tgz
Old sources: JBrowseR archive

Reverse dependencies:

Reverse imports: viewpoly

Linking:

Please use the canonical form https://CRAN.R-project.org/package=JBrowseR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.