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PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) <doi:10.48550/arXiv.1809.09014>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Version: 0.1.9
Depends: R (≥ 3.1.0), Rcpp, methods
Imports: PCMBase, data.table, abind
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown, covr
Published: 2020-03-23
DOI: 10.32614/CRAN.package.PCMBaseCpp
Author: Venelin Mitov [aut, cre, cph] (<a href="https://venelin.github.io">venelin.github.io</a>)
Maintainer: Venelin Mitov <vmitov at gmail.com>
BugReports: https://github.com/venelin/PCMBaseCpp/issues
License: GPL (≥ 3.0)
URL: https://github.com/venelin/PCMBaseCpp, https://venelin.github.io
NeedsCompilation: yes
Citation: PCMBaseCpp citation info
Materials: README NEWS
CRAN checks: PCMBaseCpp results

Documentation:

Reference manual: PCMBaseCpp.pdf
Vignettes: Getting started

Downloads:

Package source: PCMBaseCpp_0.1.9.tar.gz
Windows binaries: r-devel: PCMBaseCpp_0.1.9.zip, r-release: PCMBaseCpp_0.1.9.zip, r-oldrel: PCMBaseCpp_0.1.9.zip
macOS binaries: r-release (arm64): PCMBaseCpp_0.1.9.tgz, r-oldrel (arm64): PCMBaseCpp_0.1.9.tgz, r-release (x86_64): PCMBaseCpp_0.1.9.tgz, r-oldrel (x86_64): PCMBaseCpp_0.1.9.tgz
Old sources: PCMBaseCpp archive

Reverse dependencies:

Reverse suggests: mvSLOUCH

Linking:

Please use the canonical form https://CRAN.R-project.org/package=PCMBaseCpp to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.