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A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.
| Version: | 1.2.9 |
| Depends: | R (≥ 4.0) |
| Imports: | Rcpp, jsonlite, ks, brotli, shiny, shinyFiles, shinyjs, htmlwidgets, ggplot2 (≥ 3.0.0), htmltools, rmarchingcubes, shape, ellipsis, MASS, magrittr, igraph, dplyr, vctrs, rlang |
| LinkingTo: | Rcpp, RcppArmadillo, RcppProgress, RcppEnsmallen, rapidjsonr |
| Suggests: | testthat, r3js, knitr, rmarkdown, rstudioapi, plotly, geometry, readxl, stringr, tibble, tidyr, base64enc, lifecycle, MCMCpack, spelling |
| Published: | 2023-11-30 |
| DOI: | 10.32614/CRAN.package.Racmacs |
| Author: | Sam Wilks [aut, cre] |
| Maintainer: | Sam Wilks <sw463 at cam.ac.uk> |
| BugReports: | https://github.com/acorg/Racmacs/issues |
| License: | AGPL-3 |
| URL: | https://acorg.github.io/Racmacs/, https://github.com/acorg/Racmacs/ |
| NeedsCompilation: | yes |
| Language: | en-GB |
| Materials: | README NEWS |
| CRAN checks: | Racmacs results |
| Reference manual: | Racmacs.pdf |
| Vignettes: |
Working with sequence data Assessing map uncertainty Comparing maps Customising map appearance Making an antigenic map from titer data Merging maps |
| Package source: | Racmacs_1.2.9.tar.gz |
| Windows binaries: | r-devel: Racmacs_1.2.9.zip, r-release: Racmacs_1.2.9.zip, r-oldrel: Racmacs_1.2.9.zip |
| macOS binaries: | r-release (arm64): Racmacs_1.2.9.tgz, r-oldrel (arm64): Racmacs_1.2.9.tgz, r-release (x86_64): Racmacs_1.2.9.tgz, r-oldrel (x86_64): Racmacs_1.2.9.tgz |
| Old sources: | Racmacs archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.