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SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Version: 2.0.2
Depends: R (≥ 4.0.0)
Suggests: AnnotationDbi, assertthat, AUCell, circlize, cli, cluster, clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR, dplyr (≥ 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm, ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (≥ 3.4.0), ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics, infercnv, knitr, labeling, magrittr, MASS, Matrix, methods, Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf, RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore, Seurat, SeuratObject, sf, stringr, svglite, testthat (≥ 3.0.0), tibble, tidyr, UCell, viridis, withr
Published: 2023-10-11
DOI: 10.32614/CRAN.package.SCpubr
Author: Enrique Blanco-Carmona ORCID iD [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr at gmail.com>
BugReports: https://github.com/enblacar/SCpubr/issues/
License: GPL-3
URL: https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/
NeedsCompilation: no
Citation: SCpubr citation info
Materials: README NEWS
CRAN checks: SCpubr results

Documentation:

Reference manual: SCpubr.pdf
Vignettes: reference_manual

Downloads:

Package source: SCpubr_2.0.2.tar.gz
Windows binaries: r-devel: SCpubr_2.0.2.zip, r-release: SCpubr_2.0.2.zip, r-oldrel: SCpubr_2.0.2.zip
macOS binaries: r-release (arm64): SCpubr_2.0.2.tgz, r-oldrel (arm64): SCpubr_2.0.2.tgz, r-release (x86_64): SCpubr_2.0.2.tgz, r-oldrel (x86_64): SCpubr_2.0.2.tgz
Old sources: SCpubr archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SCpubr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.