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Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
Version: | 1.4.1 |
Depends: | R (≥ 3.5.0) |
Imports: | HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils |
Suggests: | rmarkdown, knitr, EBImage, readr, BiocManager |
Published: | 2023-02-22 |
Author: | Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut] |
Maintainer: | Pranav Sampara <pranav.sai.4 at gmail.com> |
BugReports: | https://github.com/ZielsLab/SIPmg |
License: | GPL-2 |
URL: | https://zielslab.github.io/SIPmg.github.io/ |
NeedsCompilation: | yes |
CRAN checks: | SIPmg results |
Reference manual: | SIPmg.pdf |
Vignettes: |
SIPmg-vignette |
Package source: | SIPmg_1.4.1.tar.gz |
Windows binaries: | r-devel: SIPmg_1.4.1.zip, r-release: SIPmg_1.4.1.zip, r-oldrel: SIPmg_1.4.1.zip |
macOS binaries: | r-release (arm64): SIPmg_1.4.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): SIPmg_1.4.1.tgz, r-oldrel (x86_64): not available |
Old sources: | SIPmg archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.