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Statistical analysis as part of a quantitative stable isotope probing (SIP) metagenomics study to identify isotope incorporating metagenomic features. Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
| Version: | 3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table, DESeq2, dplyr, ggplot2, ggpubr, glue, lazyeval, magrittr, MASS, phyloseq, plyr, purrr, rlang, stringr, tibble, tidyr, utils |
| Suggests: | BiocManager, EBImage, knitr, readr, rmarkdown, tidyverse |
| Published: | 2025-09-24 |
| DOI: | 10.32614/CRAN.package.SIPmg |
| Author: | Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut], Alma Garcia Roche [aut] |
| Maintainer: | Pranav Sampara <pranav.sai.4 at gmail.com> |
| BugReports: | https://github.com/ZielsLab/SIPmg/issues |
| License: | GPL-2 |
| URL: | https://zielslab.github.io/SIPmg.github.io/ |
| NeedsCompilation: | yes |
| CRAN checks: | SIPmg results [issues need fixing before 2025-10-08] |
| Reference manual: | SIPmg.html , SIPmg.pdf |
| Vignettes: |
SIPmg-vignette (source, R code) |
| Package source: | SIPmg_3.0.tar.gz |
| Windows binaries: | r-devel: SIPmg_3.0.zip, r-release: SIPmg_3.0.zip, r-oldrel: SIPmg_3.0.zip |
| macOS binaries: | r-release (arm64): SIPmg_3.0.tgz, r-oldrel (arm64): SIPmg_3.0.tgz, r-release (x86_64): SIPmg_3.0.tgz, r-oldrel (x86_64): SIPmg_3.0.tgz |
| Old sources: | SIPmg archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.