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Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
| Version: | 1.0.7 |
| Depends: | R (≥ 3.0) |
| Imports: | testthat (≥ 0.7.1), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid |
| Suggests: | knitr (≥ 1.4), rmarkdown (≥ 0.9.5) |
| Published: | 2019-04-01 |
| DOI: | 10.32614/CRAN.package.bedr |
| Author: | Syed Haider [aut], Daryl Waggott [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Paul C. Boutros [aut, cre, cph] |
| Maintainer: | Paul C. Boutros <pboutros at mednet.ucla.edu> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| SystemRequirements: | Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'. |
| Materials: | NEWS |
| CRAN checks: | bedr results |
| Reference manual: | bedr.pdf |
| Vignettes: |
bedr |
| Package source: | bedr_1.0.7.tar.gz |
| Windows binaries: | r-devel: bedr_1.0.7.zip, r-release: bedr_1.0.7.zip, r-oldrel: bedr_1.0.7.zip |
| macOS binaries: | r-release (arm64): bedr_1.0.7.tgz, r-oldrel (arm64): bedr_1.0.7.tgz, r-release (x86_64): bedr_1.0.7.tgz, r-oldrel (x86_64): bedr_1.0.7.tgz |
| Old sources: | bedr archive |
| Reverse imports: | chicane, Ravages |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.