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Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
| Version: | 1.12.15 |
| Depends: | R (≥ 3.4), bigstatsr (≥ 1.5.11) |
| Imports: | bigassertr (≥ 0.1.6), bigparallelr, bigsparser (≥ 0.6), bigreadr, bigutilsr (≥ 0.3.3), data.table (≥ 1.12.4), doRNG, foreach, ggplot2, magrittr, Matrix (≥ 1.3.0), methods, Rcpp, runonce (≥ 0.2.3), stats, vctrs |
| LinkingTo: | bigsparser, bigstatsr, Rcpp, RcppArmadillo (≥ 0.9.600), rmio, roptim (≥ 0.1.6) |
| Suggests: | bindata, covr, dbplyr (≥ 1.4), dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt (≥ 4.1), quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost |
| Published: | 2024-09-20 |
| DOI: | 10.32614/CRAN.package.bigsnpr |
| Author: | Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths] |
| Maintainer: | Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: | https://github.com/privefl/bigsnpr/issues |
| License: | GPL-3 |
| URL: | https://privefl.github.io/bigsnpr/ |
| NeedsCompilation: | yes |
| SystemRequirements: | A few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris). |
| Language: | en-US |
| Citation: | bigsnpr citation info |
| Materials: | README NEWS |
| CRAN checks: | bigsnpr results |
| Reference manual: | bigsnpr.pdf |
| Package source: | bigsnpr_1.12.15.tar.gz |
| Windows binaries: | r-devel: bigsnpr_1.12.15.zip, r-release: bigsnpr_1.12.15.zip, r-oldrel: bigsnpr_1.12.15.zip |
| macOS binaries: | r-release (arm64): bigsnpr_1.12.15.tgz, r-oldrel (arm64): bigsnpr_1.12.15.tgz, r-release (x86_64): bigsnpr_1.12.15.tgz, r-oldrel (x86_64): bigsnpr_1.12.15.tgz |
| Old sources: | bigsnpr archive |
| Reverse imports: | locStra, PRSPGx, RapidoPGS |
| Reverse suggests: | plmmr |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.