The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

bioseq: A Toolbox for Manipulating Biological Sequences

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.

Version: 0.1.4
Depends: R (≥ 3.1.0)
Imports: methods, vctrs, tibble, ape, crayon, dplyr, pillar, stringi, stringr, stringdist, readr, rlang
Suggests: knitr, rmarkdown, testthat (≥ 2.1.0), covr
Published: 2022-09-06
DOI: 10.32614/CRAN.package.bioseq
Author: Francois Keck ORCID iD [aut, cre, cph]
Maintainer: Francois Keck <francois.keck at gmail.com>
BugReports: https://github.com/fkeck/bioseq/issues
License: GPL-3
URL: https://fkeck.github.io/bioseq/
NeedsCompilation: no
Citation: bioseq citation info
Materials: README NEWS
In views: Omics
CRAN checks: bioseq results

Documentation:

Reference manual: bioseq.pdf
Vignettes: Introduction to the 'bioseq' package
Cleaning and exploring NCBI data with the 'bioseq' package

Downloads:

Package source: bioseq_0.1.4.tar.gz
Windows binaries: r-devel: bioseq_0.1.4.zip, r-release: bioseq_0.1.4.zip, r-oldrel: bioseq_0.1.4.zip
macOS binaries: r-release (arm64): bioseq_0.1.4.tgz, r-oldrel (arm64): bioseq_0.1.4.tgz, r-release (x86_64): bioseq_0.1.4.tgz, r-oldrel (x86_64): bioseq_0.1.4.tgz
Old sources: bioseq archive

Reverse dependencies:

Reverse imports: mobileRNA
Reverse suggests: tidysq

Linking:

Please use the canonical form https://CRAN.R-project.org/package=bioseq to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.